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Riccardo Delli Ponti
Postdoc at Gene Function and Evolution, Bioinformatics Department, Centre for Genomic Regulation (CRG) PhD in Biomedicine, Centre for Genomic Regulation (CRG) and University Pompeu Fabra (UPF), Barcelona, Spain (2018) Supervisor: Prof. Gian Gaetano Tartaglia MS Degree in Bioinformatics, Tor Vergata University of Rome, Italy BS Degree in Biotechnology, Tor Vergata University of Rome, Italy riccardo.ponti[at]ntu.edu.sg |
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Publications
[1] Riccardo Delli Ponti, Alexandros Armaos, Andrea Vandelli and Gian Gaetano Tartaglia. CROSSalive: a web server for predicting the in vivo structure of RNA molecules. Bioinformatics, 2019
[2] Marion Alriquet, Adrian Martinez-Limon, Riccardo Delli Ponti, Martin Hengesbach, Gian Tartaglia, Giulia Calloni, and Martin Vabulas. Free RNA recruits TRMT6/61A methyltrasferase in the early phase of proteostasis stress. Molecular Cell, 2019 [under review]
[3] E. Panatta, A. Lena, M. Mancini, A. Smirnov, R Delli Ponti, T. Botta-Orfila, G. Tartaglia, G. Calin, G. Melino, E. Candi. Ultra-conserved non-coding transcript T-UC291 controls keratinocyte differentiation by interfering with ACTL6A. EMBO Reports, 2019 [under review]
[4] Roberto Vendramin, Yvessa Verheyden, Hideaki Ishikawa, Lucas Goedert, Emilien Nicolas, Kritika Saraf, Alexandros Armaos, Riccardo Delli Ponti, Keiichi Izumikawa, Pieter Mestdagh, Denis Lafontaine, Gian Gaetano Tartaglia, Nobuhiro Takahashi, Jean-Christophe Marine. SAMMSON fosters cancer cell fitness by enhancing concertedly mitochondrial and cytosolic translation. Nature Structural and Molecular Biology, 2018
[5] Riccardo Delli Ponti, Alexandros Armaos, Stefanie Marti and Gian Gaetano Tartaglia. A method for RNA structure prediction shows evidence for structure in lncRNAs. Frontiers in Molecular Biosciences, 2018
[6] Teresa Botta-Orfila, Fernando Cid-Samper, Iona Gelabert-Baldrich, Benjamin Lang, Nieves Lorenzo-Gotor, Riccardo Delli Ponti, Lies-Anne WFM Severijnen, Benedetta Bolognesi, Ellen Gelpi, Renate K. Hukema-Felten, Gian Gaetano Tartaglia. An Integrative Study of Protein-RNA Condensates
Identifies Scaffolding RNAs and Reveals Players in Fragile X-Associated Tremor/Ataxia Syndrome. Cell Reports, 2018
[7] Ribeiro D, Zanzoni A, Cipriano A, Delli Ponti R, Spinelli L, Ballarino M, Bozzoni I, Tartaglia GG, Brun C. Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs. Nucleic Acids Research. 2017
[8] Delli Ponti R, Marti S, Armaos A, Tartaglia GG. A high-throughput approach to profile RNA structure. Nucleic Acids Research. 2017 March 17. pii: gkw1094.
[9] Klus P, Ponti RD, Livi CM, Tartaglia GG. Structural disorder and RNA-binding ability: a new approach for physico-chemical and gene ontology classification of multiple datasets. BMC Genomics. 2015 Dec 16;16:1071
[10] Livi CM, Klus P, Delli Ponti R, Tartaglia GG catRAPID signature: identification of ribonucleoproteins and RNA-binding regions. Bioinformatics. 2015 Oct 31. pii: btv629
[11] Agostini F, Cirillo D, Delli Ponti R, Tartaglia GG. SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences. BMC Genomics. 2014 Oct 23;15(1):925.
[12] Agostini F, Cirillo D, Livi CM, Delli Ponti R, Tartaglia GG. ccSOL omics: a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli. Bioinformatics. 2014 Oct 15;30(20):2975-7.
[1] Riccardo Delli Ponti, Alexandros Armaos, Andrea Vandelli and Gian Gaetano Tartaglia. CROSSalive: a web server for predicting the in vivo structure of RNA molecules. Bioinformatics, 2019
[2] Marion Alriquet, Adrian Martinez-Limon, Riccardo Delli Ponti, Martin Hengesbach, Gian Tartaglia, Giulia Calloni, and Martin Vabulas. Free RNA recruits TRMT6/61A methyltrasferase in the early phase of proteostasis stress. Molecular Cell, 2019 [under review]
[3] E. Panatta, A. Lena, M. Mancini, A. Smirnov, R Delli Ponti, T. Botta-Orfila, G. Tartaglia, G. Calin, G. Melino, E. Candi. Ultra-conserved non-coding transcript T-UC291 controls keratinocyte differentiation by interfering with ACTL6A. EMBO Reports, 2019 [under review]
[4] Roberto Vendramin, Yvessa Verheyden, Hideaki Ishikawa, Lucas Goedert, Emilien Nicolas, Kritika Saraf, Alexandros Armaos, Riccardo Delli Ponti, Keiichi Izumikawa, Pieter Mestdagh, Denis Lafontaine, Gian Gaetano Tartaglia, Nobuhiro Takahashi, Jean-Christophe Marine. SAMMSON fosters cancer cell fitness by enhancing concertedly mitochondrial and cytosolic translation. Nature Structural and Molecular Biology, 2018
[5] Riccardo Delli Ponti, Alexandros Armaos, Stefanie Marti and Gian Gaetano Tartaglia. A method for RNA structure prediction shows evidence for structure in lncRNAs. Frontiers in Molecular Biosciences, 2018
[6] Teresa Botta-Orfila, Fernando Cid-Samper, Iona Gelabert-Baldrich, Benjamin Lang, Nieves Lorenzo-Gotor, Riccardo Delli Ponti, Lies-Anne WFM Severijnen, Benedetta Bolognesi, Ellen Gelpi, Renate K. Hukema-Felten, Gian Gaetano Tartaglia. An Integrative Study of Protein-RNA Condensates
Identifies Scaffolding RNAs and Reveals Players in Fragile X-Associated Tremor/Ataxia Syndrome. Cell Reports, 2018
[7] Ribeiro D, Zanzoni A, Cipriano A, Delli Ponti R, Spinelli L, Ballarino M, Bozzoni I, Tartaglia GG, Brun C. Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs. Nucleic Acids Research. 2017
[8] Delli Ponti R, Marti S, Armaos A, Tartaglia GG. A high-throughput approach to profile RNA structure. Nucleic Acids Research. 2017 March 17. pii: gkw1094.
[9] Klus P, Ponti RD, Livi CM, Tartaglia GG. Structural disorder and RNA-binding ability: a new approach for physico-chemical and gene ontology classification of multiple datasets. BMC Genomics. 2015 Dec 16;16:1071
[10] Livi CM, Klus P, Delli Ponti R, Tartaglia GG catRAPID signature: identification of ribonucleoproteins and RNA-binding regions. Bioinformatics. 2015 Oct 31. pii: btv629
[11] Agostini F, Cirillo D, Delli Ponti R, Tartaglia GG. SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences. BMC Genomics. 2014 Oct 23;15(1):925.
[12] Agostini F, Cirillo D, Livi CM, Delli Ponti R, Tartaglia GG. ccSOL omics: a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli. Bioinformatics. 2014 Oct 15;30(20):2975-7.